Wednesday, December 06, 2006

China, Still a Pre-Scientific Society

China was one of the most advanced nations in the world, when most of them were agricultural. Actually, China was one of the only handful of regions that independently developed agriculture on earth, at around 10 to 8 thousand years ago.

The earliest agriculture was invented about 12-1o thousand years ago, in nowaday Middle East. The agricultural expanded outward following population growth as an outcome of agriculture, into most of Europe and the rest of West Asia. Farmers and agriculture spread much slower than industry and were stopped by high mountains in central Asia. About 2 thousand years later, China independently invented the agriculture. Farmers in China also spreaded outward, to as far as Tibet and Southeast Asia.

At its core region, the Yellow River and Yangtze River regions, the advantage of inventing agriculture persisted even after thousands of years of agriculture development. That's why China, not other countries dominated East Asia and South East Asia for so long. That's also why Arab civilization dominated Middle East for centuries.

Things changed only after human being invented another completely new way of living - industry, backed by modern science, a new way of thinking. West Europe and its decendent - North America, has dominated human civilizations ever since then. Although Arab and China seemed have implemented lots of things invented by West Europe, such as industrial infra-structures, "laws", and modern universities, they are still, deep in their hearts, pre-scientific societies.

Tuesday, December 05, 2006

Resveratrol and Drug Discovery

Resveratrol, whose chemical structure is shown on the left, is not a house-hold name yet. But it may very well be one, maybe in a year or so. Published data demontrated that it could extend the life-span of yeast, worm, fly, fish, and mice up to 20-50%. At such a grand evolution scale, it seems to me its effect on human should be very promising.

The mechanism of resveratrol was proposed to involve an enzyme called sertuin, which removes a acyl group (CH3CO-) from an acyl-lysine sidechain in a protein. Cell uses the acylation/deacylation, much in the same way as phosphorylation/dephophorylation, to regulate many crucial activities. The physical basis all involve introduce/eliminate a charge in a protein so that a significant reorganization of the protein structure would take place and thus function differently. The enzyme needs help from NAD+ in order to do the job, a mechanism nature has designed to link the acylation/deacylation to metabolism. That's because NAD+ and its reducing form NADH, especially their concentration ratio reflects how well an animal is fed - more NADH means more food, vice versa, because the energy in the food is converted to the reducing power of NADH, which is then used to reduce O2 gas breathed in to generate energy that every cell can use - ATP. Resveratrol was shown to increase the activity of sertuin, thus mimicing the effect of increasing NAD+/NADH ratio, thus mimicing the starvation condition, the only proved way of extending life span of a primate. Most of the research I presented in the paragraph came from a Harvard group. So far so good.

But some scientists disagree the above mechanism - one group from U of Minesota and another one from U of Washington. They said the effect of resveratrol is ARTIFICIAL - it only increase the sirtuin activity when the artificial substrate - a peptide embeded with an fluorophore. Their data is frustating for those who like to extend their life or their youth life by taking resveratrol. Of course, resveratrol could still have effect even though its mechanism through activating sirtuin proves to be wrong. Other posible mechanism includes well-known anti-oxidant. So far, I am unable to tell who is right who is wrong.

Tuesday, November 28, 2006

Mars Global Surveyer is Lost

This is such a sad story that took place a couple weeks ago. I was constantly looking for updates on NASA and JPL's website after a week of silence because signal block between Earth and Mars by the Sun. All of a sudden, bad news came to my attention that MGS was lost when NASA wanted to recontact it after it came back from behind the Sun.

Even though it is an "aged" craft - 10 years of service around Mars, sending back thousands of pictures, I still felt sad about its loss. NASA tried very hard several times to regain control but failed in the end. I was touched when I read that one NASA scientist called MGS, a longtime friend and teacher. It really is our teacher.

Thursday, September 15, 2005

The Beauty of Molecule

All matters in the world are made of limited types of atoms through their limitless ways of combinations, called molecules. For example, the table sugar are crystals of sucrose molecules, i.e. enormous numbers of sucrose molecules organized in a repetitive three-dimensional lattice. When a spoon of tiny sucrose crystals is put into water, the lattice collapses and single sucrose molecule enters a sea of water molecules, surrounded by them, a process called dissolution. There are only three types of atoms in a sucrose molecule, carbon, oxygen, and hydrogen. Actually, these three types of atoms plus nitrogen, phosphorous form most of the molecules in our body.


Let's talk about nitrogen. Two nitrogen atoms form a nitrogen gas molecule, countless numbers of which enters your lung each time you breath in air. They do not really enter your body, however; they are breathed out. The molecules enter your body are oxygen gas molecule, formed by two oxygen atoms. So, where do the nitrogen atoms in our body come from? The only way is the food, not in the form of nitrogen gas, but mainly in the form of protein. Not only we cannot use nitrogen gas, neither can the majority of animals and plants.


A small group of microbes that do have the capability of directly using the nitrogen gas produce a very special enzyme (a protein molecule that act as a catalyst, which speeds up conversions of other molecules), called nitrogenase. Nitrogenase speeds up the conversion of nitrogen gas molecule to ammonia molecule, well, actually makes the conversion possible by coupling it with consumptions of a universal biological energy-bill, a molecule called ATP. ATP contains three phosphorous atoms linked energetically by two oxgen atoms, respectively, i.e. lots of energy is released if the link breaks, usually by intervening of a water molecule.

To be able to do this difficult job, so called nitrogen fixation, Nature has built nitrogenase into a very complex molecule. In the last decade, scientists have gained unprecedented insights into how the complex molecular system carry out the difficult job. A recent issue of Science published another milestone paper that will help we human being to understand the beauty of those wonderful molecules.

Wednesday, September 14, 2005

Looking Back at Our Moon


NASA's latest exploration spacecraft to Mars (MRO) is now 6 million miles away from Earth, when it stretches its muscle, pointing its high resolution camera at our Moon. At this distance, assuming we are in the MRO, the Moon would be as small as a shiny star. But to MRO's high resolution camera, what it saw was a beautiful crescent shown above. Once it is in Mars orbital, it is going to discern a Martian object as small as a coffee table! Using this wonderful camera, NASA hopes to locate the ill-fated Mars Polar Lander and another ill-fated lander made by Europian Space Agency.

Wednesday, September 07, 2005

My Awe towards a Spectrum, a Martian One


I had never been awed by anything, not even the most beautiful and weirdest creatures in the Monterey Aquarium. However, I was completely speechless the moment I first saw, about one and a half years ago, the above Mossbauer spectra taken by a NASA robotic geologist, opportunity, on Mars. Mossbauer spectroscopy is good at deciphering the finest details of iron-containing compounds (minerals). And the above graph compares the Mossbauer spectra of two spots scores of centimeters apart on a Martian rock, hundreds of millions of miles away from Earth! One spot, which holds much of the little rounded pebbles, is much richer in hematite, than the other. On Earth, hematite formation mainly involved water and thus the above spectrum is one of the most convincing evidence of past liquid water on Martian surface!

The Mossbauer spectrometer that made this discovery was built by a group of German scientists. This reminded me of a German post-doc in our lab, who failed to correct our spelling of the word Mossbaur. Anyway, good job!

Tuesday, September 06, 2005

Translation Means a Lot

I went to college in the late '80s in China. In addition to various textbooks, the university bookstore were full of translational "masterpieces" at that time. While I was reading college physics, chemistry, and biology textbooks, many students were "reading" those translational "masterpieces", e.g. "Entropy", "Post-Modernism", etc. etc. I tried several times to read a few, only to embarrass myself as I usually gave up before finishing the first chapter. I couldn't tell what went wrong. "The topics are too advanced for me?" I would utter to myself, after each failure.

Fifteen years later, finally I know why, thanks to some of the detailed investigations done by Dr. Fang at Xinyusi. It was the bad translation. What Dr. Fang showed was that, many Chinese versions of some of the most famous scholarly book were so poorly transtlated that they are simply incomprehensible by Chinese readers. The examples include, very unfortunately, "Consilience: the Unity of Knowledge" by Edward I. Wilson, "Evolution: the History of an Idea" by Peter J. Bowler, both "translated" by Tian Min. Most of the translators neither hold an advanced degree nor lived (for an extended period of time, not just visiting) in the western countries. Therefore, they have neither the language skill nor the technical background to fulfill the difficult job of translation.

Before finishing this post, I would like to give links to two of my recent translations, both of which were published in a Chinese on-line journal: Our Science.